Kooi, Craig W. Vander: search on Z-Library

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1

Expanding the 3-O-sulfate Proteome - Enhanced Binding of Neuropilin-1 to 3-O-sulfated Heparan Sulfate Modulates its Activity

Thacker, Bryan E, Seamen, Emylie, Lawrence, Roger, Parker, Matthew W., Xu, Yongmei, Liu, Jian, Vander Kooi, Craig W., Esko, Jeffrey D

Journal:

ACS Chemical Biology

Year:

2016

Language:

english

File:

PDF, 1.10 MB

english, 2016

2

Calcium-Modulated S100 Protein−Phospholipid Interactions. An NMR Study of Calbindin D 9k and DPC

Malmendal, Anders, Vander Kooi, Craig W., Nielsen, Niels Chr., Chazin, Walter J.

Journal:

Year:

2005

Language:

english

File:

PDF, 5 KB

english, 2005

3

Structure of the Arabidopsis Glucan Phosphatase LIKE SEX FOUR2 Reveals a Unique Mechanism for Starch Dephosphorylation

David A. Meekins, Hou-Fu Guo, Satrio Husodo, Bradley C. Paasch, Travis M. Bridges, Diana Santelia, Oliver Kötting, Craig W. Vander Kooi and Matthew S. Gentry

Journal:

Year:

2013

Language:

english

File:

PDF, 2.49 MB

english, 2013

4

Stoichiometry of the Calcineurin Regulatory Domain–Calmodulin Complex

Dunlap, Tori B., Guo, Hou-Fu, Cook, Erik C., Holbrook, Emily, Rumi-Masante, Julie, Lester, Terrence E., Colbert, Christopher L., Vander Kooi, Craig W., Creamer, Trevor P.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.84 MB

english, 2014

5

Structural insights into the U-box, a domain associated with multi-ubiquitination

Ohi, Melanie D., Vander Kooi, Craig W., Rosenberg, Joshua A., Chazin, Walter J., Gould, Kathleen L.

Journal:

Natural Structural Biology

Year:

2003

Language:

english

File:

PDF, 1.33 MB

english, 2003

6

Mechanistic Basis for the Potent Anti-Angiogenic Activity of Semaphorin 3F

Guo, Hou-Fu, Li, Xiaobo, Parker, Matthew W., Waltenberger, Johannes, Becker, Patrice M., Vander Kooi, Craig W.

Journal:

Year:

2013

Language:

english

File:

PDF, 2.34 MB

english, 2013

7

Oligomerization and carbohydrate binding of glucan phosphatases

Sharma, Savita, Vander Kooi, Carl D., Gentry, Matthew S., Vander Kooi, Craig W.

Journal:

Analytical Biochemistry

Year:

2018

Language:

english

File:

PDF, 831 KB

english, 2018

8

N-glycosylation-defective splice variants of neuropilin-1 promote metastasis by activating endosomal signals

Huang, Xiuping, Ye, Qing, Chen, Min, Li, Aimin, Mi, Wenting, Fang, Yuxin, Zaytseva, Yekaterina Y., O’Connor, Kathleen L., Vander Kooi, Craig W., Liu, Side, She, Qing-Bai

Journal:

Nature Communications

Year:

2019

File:

PDF, 6.10 MB

2019

9

The Tubulation Activity of a Fission Yeast F-BAR Protein Is Dispensable for Its Function in Cytokinesis

McDonald, Nathan A., Takizawa, Yoshimasa, Feoktistova, Anna, Xu, Ping, Ohi, Melanie D., Vander Kooi, Craig W., Gould, Kathleen L.

Journal:

Year:

2016

Language:

english

File:

PDF, 4.89 MB

english, 2016

10

Mechanism of Selective VEGF-A Binding by Neuropilin-1 Reveals a Basis for Specific Ligand Inhibition

Parker, Matthew W., Xu, Ping, Guo, Hou-Fu, Vander Kooi, Craig W., Gilestro, Giorgio F.

Journal:

Year:

2012

Language:

english

File:

PDF, 1003 KB

english, 2012

11

Crystal Structure of the CaV2 IQ Domain in Complex with Ca2+/Calmodulin: High-Resolution Mechanistic Implications for Channel Regulation by Ca2+

Masayuki X. Mori, Craig W. Vander Kooi, Daniel J. Leahy, David T. Yue

Journal:

Year:

2008

Language:

english

File:

PDF, 1.73 MB

english, 2008

12

Control of cellular motility by neuropilin-mediated physical interactions

Li, Xiaobo, Parker, Matthew W., Kooi, Craig W. Vander

Journal:

BioMolecular Concepts

Year:

2014

Language:

english

File:

PDF, 1.23 MB

english, 2014

13

Functional Integration of the Conserved Domains of Shoc2 Scaffold

Jeoung, Myoungkun, Abdelmoti, Lina, Jang, Eun Ryoung, Vander Kooi, Craig W., Galperin, Emilia, Sudha, Agarwal

Journal:

Year:

2013

Language:

english

File:

PDF, 5.88 MB

english, 2013

14

Magnetization Transfer via Residual Dipolar Couplings: Application to Proton–Proton Correlations in Partially Aligned Proteins

Maurizio Pellecchia, Craig W Vander Kooi, Kai Keliikuli, Erik R.P Zuiderweg

Journal:

Journal of Magnetic Resonance

Year:

2000

Language:

english

File:

PDF, 97 KB

english, 2000

15

Fluorinated N , N -Dialkylaminostilbenes Repress Colon Cancer by Targeting Methionine S -Adenosyltransferase 2A

Zhang, Wen, Sviripa, Vitaliy, Chen, Xi, Shi, Jiandang, Yu, Tianxin, Hamza, Adel, Ward, Nicholas D., Kril, Liliia M., Vander Kooi, Craig W., Zhan, Chang-Guo, Evers, B. Mark, Watt, David S., Liu, Chunmi

Journal:

ACS Chemical Biology

Year:

2013

Language:

english

File:

PDF, 4.26 MB

english, 2013

16

Structure and functions of angiotensinogen

Lu, Hong, Cassis, Lisa A, Kooi, Craig W Vander, Daugherty, Alan

Journal:

Hypertension Research

Year:

2016

Language:

english

File:

PDF, 894 KB

english, 2016

17

How an alloreactive T-cell receptor achieves peptide and MHC specificity

Wang, Yuan, Singh, Nishant K., Spear, Timothy T., Hellman, Lance M., Piepenbrink, Kurt H., McMahan, Rachel H., Rosen, Hugo R., Vander Kooi, Craig W., Nishimura, Michael I., Baker, Brian M.

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.67 MB

english, 2017

18

[Methods in Enzymology] Laboratory Methods in Enzymology: DNA Volume 529 || Megaprimer Method for Mutagenesis of DNA

Vander Kooi, Craig W.

Year:

2013

Language:

english

File:

PDF, 767 KB

english, 2013

19

Structural biology of glucan phosphatases from humans to plants

Gentry, Matthew S, Brewer, M Kathryn, Vander Kooi, Craig W

Journal:

Current Opinion in Structural Biology

Year:

2016

Language:

english

File:

PDF, 1.45 MB

english, 2016

20

Improving T Cell Receptor On-Target Specificity via Structure-Guided Design

Hellman, Lance M., Foley, Kendra C., Singh, Nishant K., Alonso, Jesus A., Riley, Timothy P., Devlin, Jason R., Ayres, Cory M., Keller, Grant L.J., Zhang, Yuting, Vander Kooi, Craig W., Nishimura, Mich

Journal:

Molecular Therapy

Year:

2018

Language:

english

File:

PDF, 2.39 MB

english, 2018

21

Furin Processing of Semaphorin 3F Determines Its Anti-Angiogenic Activity by Regulating Direct Binding and Competition for Neuropilin

Parker, Matthew W., Hellman, Lance M., Xu, Ping, Fried, Michael G., Vander Kooi, Craig W.

Journal:

Year:

2010

Language:

english

File:

PDF, 2.25 MB

english, 2010

22

Microplate-based screening for small molecule inhibitors of neuropilin-2/vascular endothelial growth factor-C interactions

Parker, Matthew W., Vander Kooi, Craig W.

Journal:

Analytical Biochemistry

Year:

2014

Language:

english

File:

PDF, 349 KB

english, 2014

23

Computational Design of the Affinity and Specificity of a Therapeutic T Cell Receptor

Pierce, Brian G., Hellman, Lance M., Hossain, Moushumi, Singh, Nishant K., Vander Kooi, Craig W., Weng, Zhiping, Baker, Brian M., Dunbrack, Roland L.

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 601 KB

english, 2014

24

Line narrowing in spectra of proteins dissolved in a dilute liquid crystalline phase by band-selective adiabatic decoupling: Application to 1HN-15N residual dipolar coupling measurements

Craig W. Vander Kooi, Ēriks Kupče, Erik R.P. Zuiderweg, Maurizio Pellecchia

Journal:

Journal of Biomolecular NMR

Year:

1999

Language:

english

File:

PDF, 64 KB

english, 1999

25

The Glucose-6-Phosphatase Catalytic Subunit Gene Promoter Contains Both Positive and Negative Glucocorticoid Response Elements

Vander Kooi, Beth T., Onuma, Hiroshi, Oeser, James K., Svitek, Christina A., Allen, Shelley R., Vander Kooi, Craig W., Chazin, Walter J., O’Brien, Richard M.

Journal:

Molecular Endocrinology

Year:

2005

Language:

english

File:

PDF, 895 KB

english, 2005

26

Structural basis for the glucan phosphatase activity of Starch Excess4

Craig W. Vander Kooi, Adam O. Taylor, Rachel M. Pace, David A. Meekins, Hou-Fu Guo, Youngjun Kim, Matthew S. Gentry and Jack E. Dixon

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.71 MB

english, 2010

27

An Engineered Switch in T Cell Receptor Specificity Leads to an Unusual but Functional Binding Geometry

Harris, Daniel T., Singh, Nishant K., Cai, Qi, Smith, Sheena N., Vander Kooi, Craig W., Procko, Erik, Kranz, David M., Baker, Brian M.

Journal:

Year:

2016

Language:

english

File:

PDF, 5.14 MB

english, 2016

28

Systematic Two-Hybrid and Comparative Proteomic Analyses Reveal Novel Yeast Pre-mRNA Splicing Factors Connected to Prp19

Ren, Liping, McLean, Janel R., Hazbun, Tony R., Fields, Stanley, Vander Kooi, Craig, Ohi, Melanie D., Gould, Kathleen L., Uversky, Vladimir

Journal:

Year:

2011

Language:

english

File:

PDF, 3.16 MB

english, 2011

29

Oligomerization but Not Membrane Bending Underlies the Function of Certain F-BAR Proteins in Cell Motility and Cytokinesis

McDonald, Nathan A., Vander Kooi, Craig W., Ohi, Melanie D., Gould, Kathleen L.

Journal:

Developmental Cell

Year:

2015

Language:

english

File:

PDF, 4.82 MB

english, 2015

30

P-Rex1 Promotes Resistance to VEGF/VEGFR-Targeted Therapy in Prostate Cancer

Goel, Hira Lal, Pursell, Bryan, Shultz, Leonard D., Greiner, Dale L., Brekken, Rolf A., Vander Kooi, Craig W., Mercurio, Arthur M.

Journal:

Year:

2016

Language:

english

File:

PDF, 5.02 MB

english, 2016

31

T cell receptor cross-reactivity expanded by dramatic peptide–MHC adaptability

Riley, Timothy P., Hellman, Lance M., Gee, Marvin H., Mendoza, Juan L., Alonso, Jesus A., Foley, Kendra C., Nishimura, Michael I., Vander Kooi, Craig W., Garcia, K. Christopher, Baker, Brian M.

Journal:

Nature Chemical Biology

Year:

2018

Language:

english

File:

PDF, 3.12 MB

english, 2018

32

Structural dissimilarity from self drives neoepitope escape from immune tolerance

Devlin, Jason R., Alonso, Jesus A., Ayres, Cory M., Keller, Grant L. J., Bobisse, Sara, Vander Kooi, Craig W., Coukos, George, Gfeller, David, Harari, Alexandre, Baker, Brian M.

Journal:

Nature Chemical Biology

Year:

2020

File:

PDF, 5.23 MB

2020

33

Neuropilin Functions as an Essential Cell Surface Receptor

Guo, Hou-Fu, Vander Kooi, Craig W.

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 1.22 MB

english, 2015

34

Structural Mechanisms of Plant Glucan Phosphatases in Starch Metabolism

Meekins, David A., Vander Kooi, Craig W., Gentry, Matthew S.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.37 MB

english, 2016

35

10.1038/74062

Gierasch, Lila M., Zuiderweg, Erik R.P., Pellecchia, Maurizio, Montgomery, Diana L., Stevens, Shawn Y., Vander Kooi, Craig W., Feng, Hwa-ping

Journal:

Natural Structural Biology

Year:

2000

Language:

english

File:

PDF, 605 KB

english, 2000

36

4-Hydroxy-2-Nonenal Mediates Aifm2 Release From Mitochondria: An Insight Into the Mechanism of Oxidative Stress Mediated Retrograde Signaling

Sumitra Miriyala, Chadinee Thipakkorn, Yong Xu, Teresa Noel, Craig Vander Kooi, Ines Batinic-Haberle, Virapong Prachayasittikul, Daret St Clair

Journal:

Free Radical Biology and Medicine

Year:

2011

Language:

english

File:

PDF, 91 KB

english, 2011

37

Function of Members of the Neuropilin Family as Essential Pleiotropic Cell Surface Receptors

Parker, Matthew W., Guo, Hou-Fu, Li, Xiaobo, Linkugel, Andrew D., Vander Kooi, Craig W.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.79 MB

english, 2012

38

The Prp19 WD40 Domain Contains a Conserved Protein Interaction Region Essential for Its Function

Craig W. Vander Kooi, Liping Ren, Ping Xu, Melanie D. Ohi, Kathleen L. Gould, Walter J. Chazin

Journal:

Year:

2010

Language:

english

File:

PDF, 1.49 MB

english, 2010

39

Novel role of 4-hydroxy-2-nonenal in AIFm2-mediated mitochondrial stress signaling

Miriyala, Sumitra, Thippakorn, Chadinee, Chaiswing, Luksana, Xu, Yong, Noel, Teresa, Tovmasyan, Artak, Batinic-Haberle, Ines, Vander Kooi, Craig W., Chi, Wang, Latif, Ahmed Abdel, Panchatcharam, Manik

Journal:

Free Radical Biology and Medicine

Year:

2016

Language:

english

File:

PDF, 4.28 MB

english, 2016

40

The Extracellular Region of the Receptor for Advanced Glycation End Products Is Composed of Two Independent Structural Units †

Dattilo, Brian M., Fritz, Günter, Leclerc, Estelle, Vander Kooi, Craig W., Heizmann, Claus W., Chazin, Walter J.

Journal:

Year:

2007

Language:

english

File:

PDF, 2.67 MB

english, 2007

41

Effect of C-Terminal Sequence on Competitive Semaphorin Binding to Neuropilin-1

Parker, Matthew W., Linkugel, Andrew D., Vander Kooi, Craig W.

Journal:

Journal of Molecular Biology

Year:

2013

Language:

english

File:

PDF, 958 KB

english, 2013

42

Calcium-Modulated S100 Protein−Phospholipid Interactions. An NMR Study of Calbindin D 9k and DPC †

Malmendal, Anders, Vander Kooi, Craig W., Nielsen, Niels Chr., Chazin, Walter J.

Journal:

Year:

2005

Language:

english

File:

PDF, 447 KB

english, 2005

43

Corrigendum: Structure and functions of angiotensinogen

Lu, Hong, Cassis, Lisa A, Vander Kooi, Craig W, Daugherty, Alan

Journal:

Hypertension Research

Year:

2016

Language:

english

File:

PDF, 76 KB

english, 2016

44

Design, synthesis, and evaluation of a novel benzamidine-based inhibitor of VEGF-C binding to Neuropilin-2

Said, Ahmed M., Parker, Matthew W., Vander Kooi, Craig W.

Journal:

Bioorganic Chemistry

Year:

2020

File:

PDF, 1.02 MB

2020

45

GLI1 regulates a novel neuropilin-2/α6β1 integrin based autocrine pathway that contributes to breast cancer initiation

Goel, Hira Lal, Pursell, Bryan, Chang, Cheng, Shaw, Leslie M., Mao, Junhao, Simin, Karl, Kumar, Prashant, Kooi, Craig W. Vander, Shultz, Leonard D., Greiner, Dale L., Norum, Jens Henrik, Toftgard, Run

Journal:

EMBO Molecular Medicine

Year:

2013

Language:

english

File:

PDF, 1.97 MB

english, 2013

46

Mechanistic Insights into Glucan Phosphatase Activity Against Polyglucan Substrates

Meekins, David A., Raththagala, Madushi, Auger, Kyle D., Turner, Benjamin D., Santelia, Diana, Kötting, Oliver, Gentry, Matthew S., Vander Kooi, Craig W.

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 5.77 MB

english, 2015

47

Structural Basis for VEGF-C Binding to Neuropilin-2 and Sequestration by a Soluble Splice Form

Parker, Matthew W., Linkugel, Andrew D., Goel, Hira Lal, Wu, Tingting, Mercurio, Arthur M., Vander Kooi, Craig W.

Journal:

Year:

2015

Language:

english

File:

PDF, 2.64 MB

english, 2015

48

Immunization of Alpacas (Lama pacos) with Protein Antigens and Production of Antigen-specific Single Domain Antibodies

Chow, K. Martin, Whiteheart, Sidney W., Smiley, Jeffrey R., Sharma, Savita, Boaz, Kathy, Coleman, Meggie J., Maynard, Alvina, Hersh, Louis B., Vander Kooi, Craig W.

Journal:

Journal of Visualized Experiments

Year:

2019

Language:

english

File:

PDF, 627 KB

english, 2019

49

The Prp19 U-box Crystal Structure Suggests a Common Dimeric Architecture for a Class of Oligomeric E3 Ubiquitin Ligases †,‡

Vander Kooi, Craig W., Ohi, Melanie D., Rosenberg, Joshua A., Oldham, Michael L., Newcomer, Marcia E., Gould, Kathleen L., Chazin, Walter J.

Journal:

Year:

2006

Language:

english

File:

PDF, 601 KB

english, 2006

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